PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g014610.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 28088.6 Da PI: 8.3397

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g014610.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.7e-18	113	167	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++tk q Lee F+++++++ ++++ LA+kl++ rqV vWFqNrRa+ k Sopen02g014610.1 113 KKKLRLTKVQSALLEESFKQQSTLNPKQKQNLARKLNVRPRQVEVWFQNRRARTK 167 677899***********************************************98 PP
2	HD-ZIP_I/II	115.1	4.2e-37	113	201	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l++en++L ke +eL+ + Sopen02g014610.1 113 KKKLRLTKVQSALLEESFKQQSTLNPKQKQNLARKLNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKYCETLTDENKKLYKELQELK-A 201 59*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.75E-17	99	170	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-17	102	170	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	109	169	IPR001356	Homeobox domain
SMART	SM00389	1.2E-13	111	173	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-15	113	167	IPR001356	Homeobox domain
CDD	cd00086	2.01E-15	113	170	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.1E-8	169	203	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.4E-21	169	212	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MESIYDSAGL DLGLGYSSTV NQTSRKDGQV APVKSDLGFE PSLNLSLSSG DHQMVDLKTE 60 NKDQLSVASS YSNGSVKRER DIGSEVTEVE RVISCRVSHD EDYYEDDDAS NGKKKLRLTK 120 VQSALLEESF KQQSTLNPKQ KQNLARKLNV RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK 180 YCETLTDENK KLYKELQELK ALKVGQPLYM KLPAAATLTV CPSCERVGAG AAQNSAKPPH 240 LYGSFTNPSA AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066141.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-74	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A3Q7EZA2	0.0	A0A3Q7EZA2_SOLLC; Uncharacterized protein
STRING	Solyc02g063520.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-77	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]