PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g011740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 460aa MW: 50384.4 Da PI: 7.1696 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Sopen02g011740.1 57 RERWSEEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 101 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-16 | 51 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.204 | 52 | 106 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-15 | 55 | 104 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.5E-13 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 57 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-9 | 57 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.95E-10 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MTIGDQSESD SILPCRNRMS VDVGAPSPRS IQIDEQVNPG EEYAPKIRKP YTISKQRERW 60 SEEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESG NGDASSVKSI 120 EIPPPRPKRK PMHPYPRKMA TPLKSGTLAS EKLNRSGSPD LCLSEPENQS PTSVLSTLGS 180 DAFGTVDSTK PSEQSSPVSS AVAENSGDLV LSEPFDFVVE ESRSSPARAY ATSNPANQAC 240 VKLELFPEDN DFVKEGSDEA SSTQCLKLFG KTVLVTDAHM PPTDETLTRS SFPAKYLPWD 300 SECPQSTFSI VPPTPSYYFP TPNGSPGPNQ SGVATHLPRG SSCAVPCTQV HSPVPMKGRP 360 LFNDRDLEGK GTQKEGSSTG SNAVSVDAEY LEIEAQSSGN VVEESVRVRA SVPSLFERRA 420 NSTKRVKGFV PYKRCLAERG MSSPILTGEE REEQRTRLCL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064989.1 | 0.0 | protein REVEILLE 1 | ||||
TrEMBL | A8HJD6 | 0.0 | A8HJD6_SOLPE; Putative At5g37260-like protein (Fragment) | ||||
STRING | Solyc02g036370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3185 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-65 | MYB_related family protein |