PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g009350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 345aa    MW: 40166.2 Da    PI: 6.2946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g009350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-15590192
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                      ffkv+  +  ++ +++ +p  ++ ++ +gk   +++++l+d+ g+ W +++  +k+++ ++++ GW +F ++n+++  Df++F +dg+ +f +
  Sopen02g009350.1  5 FFKVF--NPETSAKWVKIPIGYT-KYkNGK--IPRKVSLRDQYGNMWPIRV--TKQGRDIYFQYGWDKFIEDNNVEFADFLIFDYDGKGTFDF 90
                      78888..677777889******9.663555..6779***************..********************************99766643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-18398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915396IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-19598IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-11593No hitNo description
SMARTSM010194.8E-9596IPR003340B3 DNA binding domain
PfamPF023621.3E-13589IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11235331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-13235323IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.965238337IPR003340B3 DNA binding domain
CDDcd100173.27E-6239301No hitNo description
SMARTSM010190.2241333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEKGFFKVFN PETSAKWVKI PIGYTKYKNG KIPRKVSLRD QYGNMWPIRV TKQGRDIYFQ  60
YGWDKFIEDN NVEFADFLIF DYDGKGTFDF KLLGMNGCVK NGSGGKNKGE EMNVERGKSV  120
ELKEKTRGSD RSNSSFDYDS DEHYMVEEDV EIKEETHKGA SYSECRYMEE EGDEKQEGEG  180
KEQKDEDEEE DERVGTYTEK VQHSKVGCRK VNVCKVSDIP EHYGADIFKS GRVTQPKNPY  240
FVAKIQERIR DKLYIPMEVL RDYKLELPSR MIIRDSAGRE FETRVSKWSD GRVWLFGGWS  300
KLGRLNLVEK DDRYICELVR GKCGKALYLQ VQVLHEGSIS HPENK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-142988104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770100.10.0B3 domain-containing protein At5g60140-like
TrEMBLA0A3Q7EY670.0A0A3Q7EY67_SOLLC; Uncharacterized protein
STRINGSolyc02g026080.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.16e-17B3 family protein