PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g008810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14493.4 Da PI: 4.8107 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.3e-11 | 15 | 89 | 8 | 90 |
-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +k+g l +p f+ ++ + + + + ++ ++W k+ ++++ + ++ W eFv++ +Lk+gD++vFk++g++ef Sopen02g008810.1 15 LPGFKNG-LKIPLGFL-KYlkR--HDQ-HEHAILTTCDKKWLGKV--NGRR---LEEGSWIEFVEELNLKVGDVLVFKHEGDMEF 89 4566666.*******9.77332..333.3566777899*******..7777...67899*******************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-17 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-17 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.01 | 7 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-9 | 8 | 95 | No hit | No description |
SMART | SM01019 | 4.1E-9 | 10 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-7 | 18 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEIPPKKPHF FKPILPGFKN GLKIPLGFLK YLKRHDQHEH AILTTCDKKW LGKVNGRRLE 60 EGSWIEFVEE LNLKVGDVLV FKHEGDMEFD VFKFDSSHHC DKEYAMYQEE DEDEDEEDED 120 KL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-169 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065118.1 | 2e-84 | B3 domain-containing protein REM5-like | ||||
TrEMBL | A0A3Q7FIV9 | 8e-70 | A0A3Q7FIV9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g055370.2.1 | 1e-70 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-13 | B3 family protein |