PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g006830.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 498aa    MW: 56562.9 Da    PI: 7.4893
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g006830.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-131772471892
                       --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       +p  ++ ++ +gk   +++++l+d+ g+ W +++  +k+++ ++++ GW++F ++n ++  Df++F +dg+ +f +
  Sopen02g006830.1 177 IPIGYT-KYkNGK--IPRKVSLRDQYGNMWPIRV--TKQGRDIYFKYGWEKFIEDNSVEFADFLIFDYDGKGTFDF 247
                       666666.453444..6778***************..********************************99766643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1610772.09E-2741138IPR000932Photosystem antenna protein-like
PfamPF004211.7E-2741136IPR000932Photosystem antenna protein-like
SMARTSM010192.3E-4167253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-15167255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16174255IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.717177253IPR003340B3 DNA binding domain
PfamPF023622.6E-11177246IPR003340B3 DNA binding domain
CDDcd100172.12E-9177250No hitNo description
SuperFamilySSF1019361.77E-10392468IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-9392465IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.317395486IPR003340B3 DNA binding domain
CDDcd100172.76E-6396458No hitNo description
SMARTSM010190.53398486IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009767Biological Processphotosynthetic electron transport chain
GO:0009521Cellular Componentphotosystem
GO:0003677Molecular FunctionDNA binding
GO:0016168Molecular Functionchlorophyll binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MPSFGKGGGS RNSHEMRLSG MPGMGVLISP SVRTYTANIG IWRGSIPMYA GIFWVTLAGD  60
STSFQCEAET VLSISIAAVF FAAFVVAGTM WYGSATTPIE LFGPTRYKWD QGYFQTEIYR  120
RVSAGLAENQ SLSEACDRNL ADLQVTIDGH HPLTVDGLMA RPGHQSFVNK APSDAKIPIG  180
YTKYKNGKIP RKVSLRDQYG NMWPIRVTKQ GRDIYFKYGW EKFIEDNSVE FADFLIFDYD  240
GKGTFDFKLL GMNGCVKNGS GGKNKGEEMN VEHGKSVELK EKTRGSDRSN SSFDYDSDEH  300
YMVEEDVEIK EETHKGASYS KCRYMEEEAD EKKEGEGKEQ KDEDEEEDER VGTYTKKVQH  360
SKVGCQKVNV CKVSDIPEHY GADIFKSGCV TQPENPYFVA KIQERIRDQL YIPLDVLRDY  420
KLELPPRMII RDSAGREFEI RVSKWTDGRV WLFGGWRKLG KLNLVEKDDR SKMKNIQYPF  480
PISRNWKSSK AKGKCLYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mdx_b9e-2430135191300Photosystem II CP47 reaction center protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770100.11e-176B3 domain-containing protein At5g60140-like
TrEMBLA0A3Q7EY670.0A0A3Q7EY67_SOLLC; Uncharacterized protein
STRINGSolyc02g026080.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-13B3 family protein