PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g004120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 345aa    MW: 39380 Da    PI: 7.9076
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g004120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57366.65.4e-2171161397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                       ++++ws+eDei+lL+G+i+fk++t  + ++ +++f  f+  s+ ++ ++ ql eKirrLK K++k  ++   g+  s +  h+ + f+l+++i
  Sopen02g004120.1  71 SSKVWSNEDEISLLKGIIKFKEQTACEITQCMTEFRAFILPSLTLQPTRVQLREKIRRLKIKYEKTLAT---GN-SSNTDVHQLELFQLCHII 159
                       5789**************************************************************999...44.47789999********** PP

            DUF573  96 Wg 97 
                       W 
  Sopen02g004120.1 160 WT 161
                       *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-1972160IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTENSTTGAA NCSVEFVREE EEIVSNKRKN DDIDVTRFLY NDTPSDGYYQ EKTPSPKPKR  60
MMNLKSKPPP SSKVWSNEDE ISLLKGIIKF KEQTACEITQ CMTEFRAFIL PSLTLQPTRV  120
QLREKIRRLK IKYEKTLATG NSSNTDVHQL ELFQLCHIIW TQPPNSLLLK EKREDGLQVK  180
EKHNNPELEK QNIRVNEKKH NIPQKGQPEK QERKHNMRPI QQHKIIPDSG LDGQTMEDLL  240
KRLAKDVELV VNSKACLQGN DNEVGRRVLN ISLKSTNLGI KLGTLVLDKA TSPELQDSPE  300
LMEQVVLRAY LEAKIEHAQL LLNAYDGLMK DNSNEAEASV SAIKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065289.10.0STOREKEEPER protein-like
TrEMBLM1APP50.0M1APP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000274400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138051214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.11e-10DNA-binding storekeeper protein-related transcriptional regulator