PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g053190.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 347aa    MW: 38804.2 Da    PI: 6.8027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g053190.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-1071120154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +v+ +k+L
  Sopen01g053190.3  71 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQILKDL 120
                       5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.26270120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1170142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-871120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-771125No hitNo description
SuperFamilySSF474591.07E-1271136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-776126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDQLNHGGLY QSNQLPNHCL TELNQLPSDV SMPPNGLHSE SSFNGQSYLV PVDRGSKQKP  60
EAELKDSIAA RKVQKADREK LRRDRLNEQF MELGKTLDPD RPKNDKASIL SDTVQILKDL  120
TAQVSRLKSE YAALTDESRE LTQEKNDLRE EKASLKSDIE SLNAQYQQRM RTMYPWAGMD  180
HSMVMHPPSY PYPMPVPIPT GPVPMHPPLQ PYPFFGNHNP AVVPNPSSFV QYMTPNTLID  240
QQPTQYMSPI IQPGSMTRQE SRNKSSDQGE SRIEKSEDSN EVATDLELKT PGSTYEQDLS  300
SGQKKSRKLP RKDNSFTDGS SSSKCSSSHS VHAVSSNSVV RGTKTGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058498.10.0transcription factor bHLH121 isoform X1
SwissprotQ9LT235e-86BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A3Q7EUG30.0A0A3Q7EUG3_SOLLC; Uncharacterized protein
STRINGSolyc01g111130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-80bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]