PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g052460.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 325aa    MW: 35966.4 Da    PI: 6.5112
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g052460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-19243276134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  Sopen01g052460.1 243 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 276
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-815321IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.308237273IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-14237287IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-15239300No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14240274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.82E-13242299No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16243276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELIEARALK SSFLSDMAMK NTQQVFLDDI WCVTGINNGA SEDFSVDDLL DFSDKDFKDP  60
ELHEDDEKTS FSGSSQRRNS QDSTFSGMES FGSLAGELPI PVDEMENLEW LSQFVDDTPS  120
EFSLLCPAES FKDKTGGFTE SRSEPVVRPV VKKTRVPCFP LPFPVKPRSK RSRQAGRTWS  180
FPSTAVSGDS SSPTSSSYGS SPFPSGFFTN PVYDGDLFCS VEKPPLKKPK KNPSAETGSG  240
RRCTHCQVQK TPQWRAGPLG PKTLCNACGV RYKSGRLFPE YRPACSPTFS LEVHSNSHRK  300
VLEMRRKKET GELIDSGLAS MISTC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063162.10.0GATA transcription factor 5
TrEMBLA0A3Q7ETJ30.0A0A3Q7ETJ3_SOLLC; GATA transcription factor
STRINGSolyc01g110310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-43GATA transcription factor 4