PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g051130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 274aa    MW: 31212.7 Da    PI: 9.6858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g051130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-17251041499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + l++p +f++++++  e++ + tl+ +sg +W+vkl  +   ++ +++kGWk+F k n+L+ g+ +vF++dg  +f  ++++f+k
  Sopen01g051130.1  25 NELRIPAHFLRHISE--ESPDKATLKCLSGGTWNVKL--QCDEDGLLIQKGWKKFQKNNQLENGEYLVFRYDGALQF--TIRIFSK 104
                       4599******88864..47779***************..888888**************************997777..9999987 PP
2B366.73.3e-21169261198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       f+k l+  +v ks+ l++p++f+e++  +g+   ++  +l++++g+ W+v++  + + g + + +GWk+Fv++n+Lkeg ++vF+l++    e
  Sopen01g051130.1 169 FVKCLKGYNVKKSCFLYVPRSFCEQFstSGN---KRAAVLRNSEGKGWKVNC--TTQNGYHAFCGGWKQFVSDNNLKEGQVCVFQLVN--ANE 254
                       7888988999*************99965444...4579**************..88888999***********************986..555 PP

                       .EEEEE- CS
                B3  92 lvvkvfr 98 
                       l+v+vf+
  Sopen01g051130.1 255 LKVSVFN 261
                       6999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2012106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-2012105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.50712105IPR003340B3 DNA binding domain
CDDcd100171.26E-1414103No hitNo description
SMARTSM010191.3E-1215105IPR003340B3 DNA binding domain
PfamPF023623.0E-1524104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-24164261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-25164261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-23167261No hitNo description
SMARTSM010196.5E-15169263IPR003340B3 DNA binding domain
PROSITE profilePS5086314.945169263IPR003340B3 DNA binding domain
PfamPF023622.9E-19169261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMENSLLKID KRAIFYKVFC PSITNELRIP AHFLRHISEE SPDKATLKCL SGGTWNVKLQ  60
CDEDGLLIQK GWKKFQKNNQ LENGEYLVFR YDGALQFTIR IFSKNGLERQ VKPTNIQASI  120
DGGSKRKRPE KFPKQTCANG ENETEHETRR KRAALGTEED LLTPNIPQFV KCLKGYNVKK  180
SCFLYVPRSF CEQFSTSGNK RAAVLRNSEG KGWKVNCTTQ NGYHAFCGGW KQFVSDNNLK  240
EGQVCVFQLV NANELKVSVF NDPSESLLKL AAQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089728.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7EST50.0A0A3Q7EST5_SOLLC; Uncharacterized protein
STRINGSolyc01g108930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-22B3 family protein