PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g050370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25915.7 Da PI: 9.4098 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.4e-15 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp +f+++h k + +tl de+g +++ k+ k++ l++GW++++ +++L +gD +vF+l+ ++f + Sopen01g050370.1 129 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--HDEYVTLVDENGDEFQTKYLALKTG----LSGGWRGYALDHELIDGDALVFQLVAPTRF--K 213 89************************433..3347***************666666....***********************9986777..8 PP EEEE- CS B3 94 vkvfr 98 v ++r Sopen01g050370.1 214 VYIIR 218 88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.37E-23 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-19 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.42E-26 | 127 | 218 | No hit | No description |
Pfam | PF02362 | 6.8E-14 | 129 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.617 | 129 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-19 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAELKKKLAY EECRLKRIEE NKKRWQELKL TMLAEDVHNA TNPKPSPMKK AKPTVRQEVD 60 RSAVRRSNRV ADKPPPNYKE VPIEPLGRPR SYKRKDLLNR VYAADEDRQY AIGRAEQLQS 120 ELDVDFPSFV KPMLQSHVTG GFWLGLPVHF CKTHLPKHDE YVTLVDENGD EFQTKYLALK 180 TGLSGGWRGY ALDHELIDGD ALVFQLVAPT RFKVYIIRVN QVED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-113 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060829.1 | 1e-167 | B3 domain-containing protein At3g19184-like | ||||
Swissprot | Q1G3M3 | 1e-82 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A3Q7ESF5 | 1e-164 | A0A3Q7ESF5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g108140.2.1 | 1e-165 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-85 | B3 family protein |
Publications ? help Back to Top | |||
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