PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 339aa    MW: 38992.4 Da    PI: 9.5182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-16130219198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k ++ps+v    +l lpk+f++ h   + +++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++    +++
  Sopen01g050360.1 130 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSSDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSISHRLLKGDLLIFRLIEP--CKMK 214
                       889********************8884..34678****************888888....***********************9974..3357 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v ++r
  Sopen01g050360.1 215 VYIVR 219
                       77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-19122221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22123221IPR015300DNA-binding pseudobarrel domain
CDDcd100177.28E-21128219No hitNo description
PfamPF023625.7E-13130219IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843130221IPR003340B3 DNA binding domain
SMARTSM010192.2E-19130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEERNFIPVK RRTKSCRKRQ QQQQQVEPHT LKSTSHSSAS TSTQTDPLSM IKTVQLDRKK  60
MIPKKPRSVK SKAKQVKSNH PRKAESHSIK RKGSKRTRIN DLYDDVEAKY SVMERAEKVL  120
SSLPDEFPSF AKCMLPSNVA HGFWLHLPKS FCNMHLPSSD TTVILVDEWG NEYKTSYLLE  180
RNGLSAGWRG FSISHRLLKG DLLIFRLIEP CKMKVYIVRV NGQEVVDAAL CLMYWETLNT  240
STELDLVRKD NRKRKKAKHL AEPFFVDLSK PKEHVQNDSH CTVDLNVSPS EHRSENNSED  300
LDSEVLEGSD VTNRLQSNEI CCSETSFLHD NPHKSIDCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-113HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063209.10.0B3 domain-containing protein At5g42700-like isoform X1
TrEMBLA0A0V0HWM90.0A0A0V0HWM9_SOLCH; Putative B3 domain-containing protein-like
STRINGSolyc01g108130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-38B3 family protein