PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 295aa    MW: 33705.9 Da    PI: 9.8565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.3e-1664149194
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k +++s+v+   +l+lp+ f++ h+  ++ ++t+tl des ++++ k+  ++++    l++GW++F  +++L egD++vF+l +  +   +
  Sopen01g050350.1  64 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCKL--K 148
                       89*********************9997..56889****************555555....9**********************8653333..4 PP

                       E CS
                B3  94 v 94 
                       v
  Sopen01g050350.1 149 V 149
                       4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-1857155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-2159155IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-2362153No hitNo description
PROSITE profilePS5086311.61764155IPR003340B3 DNA binding domain
PfamPF023622.4E-1364152IPR003340B3 DNA binding domain
SMARTSM010191.2E-1764155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKGSSLELKG WHKQVVCKKP KKRGSCKKKM TMMHNLYGQI DLATSAKYRA EEVLSRLSTK  60
YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG  120
GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPVH  180
QRQHNISMKQ VGIKRQRLSS QEGDDYSTEN MLHKHSHSTN MFKNLDLPSK GLAYETLNIV  240
DAVKASKLSD PPNGSFSSWN TRPTELEQLE MRPFSSGYSI EPALTLSGAE MIFRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11728KKPKKRGSCKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-112HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071497.10.0B3 domain-containing protein At5g42700-like
RefseqXP_015071505.10.0B3 domain-containing protein At5g42700-like
TrEMBLA0A3Q7ESM60.0A0A3Q7ESM6_SOLLC; Uncharacterized protein
STRINGSolyc01g108120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-43B3 family protein