PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g049400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 331aa    MW: 36692.7 Da    PI: 5.7975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g049400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-102542941055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sopen01g049400.1 254 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 294
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14243309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12249303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-12253298No hitNo description
PfamPF000105.7E-8254294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGACPNEQQL PSSGLPNFWT NHESNIGGSS  60
EVSIFSSQHH TNSSMYHFPT STNNFQPMLL TTSMTMEQSS HLPPTNNLIE ADAVEFLNKQ  120
VNNDSIESGE NIMSESVLHG KSLQLGREYD QMHQSEGSKK RSHSPVDHKN KRSVKPKKNM  180
KSSVADDEET GNNNNTVLHR QSSFSCCSED ESNVSSYDIY GLASSDNSKG VSLPNGKSRA  240
NRGSATDPQS LYARKRRERI NERLRILQSL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL  300
SSDDLWMYSP IAYNGMDIGL DLKIGIPNPK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KKRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088484.10.0transcription factor bHLH84-like
TrEMBLM1DD900.0M1DD90_SOLTU; Uncharacterized protein
STRINGSolyc01g107140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-55bHLH family protein