PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g048640.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 324aa    MW: 38112.7 Da    PI: 5.194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g048640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-19591193
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                      f+k++  s  ++ +rl +p +f+  ++ + + +k++ l+d+ g+ W v +  +k +g  +++ GW++F ++n +++gDf+vF +dg++ f ++
  Sopen01g048640.1  5 FVKIF--SPENSGKRLKIPTSFT-YYK-NRKLPKKINLRDRFGNMWPVGV--NKIGGNLYFQYGWEKFIEDNSVEVGDFLVFDYDGNKMFDFK 91
                      78888..66667778*******8.554.446999****************..*********************************99877444 PP
2B331.92.3e-102293111094
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                       + ++++l++p + +++++++   +  +t++d+ gr++  kl+ +k  gr++l +GW++ ++ n ++ +D ++ ++++  +++ l++
  Sopen01g048640.1 229 SKRRDQLYVPVDVVKDYKLE--LPSSMTIRDSIGREFVTKLKKWKD-GRIWLVGGWRSLCRWNLVEKNDHCICEFVRGkRNKDLHL 311
                       567899***********988..55569999***********87777.5899*********************99774434443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.029396IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-21396IPR015300DNA-binding pseudobarrel domain
PfamPF023629.5E-17590IPR003340B3 DNA binding domain
CDDcd100173.80E-15587No hitNo description
SuperFamilySSF1019369.22E-21598IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-13596IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-17216313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-16216316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.643220319IPR003340B3 DNA binding domain
CDDcd100172.22E-7221313No hitNo description
SMARTSM010194.9E-6223319IPR003340B3 DNA binding domain
PfamPF023628.4E-9229313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKGFVKIFS PENSGKRLKI PTSFTYYKNR KLPKKINLRD RFGNMWPVGV NKIGGNLYFQ  60
YGWEKFIEDN SVEVGDFLVF DYDGNKMFDF KLLGRTKCEK NGVGGLKAEE MIVEHQKSRE  120
SKEKNWASDS CNSFSSYDDD VEYMGDEDED EDEDEDEEYK ETKKVPCHVE EEEEEQEDDE  180
DEEEEDEALR SKAFACKVRN RHDHFGVDIF KSGRATQPKN PYFVAKIRSK RRDQLYVPVD  240
VVKDYKLELP SSMTIRDSIG REFVTKLKKW KDGRIWLVGG WRSLCRWNLV EKNDHCICEF  300
VRGKRNKDLH LRVQVLHEGE SSVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-122988104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071035.10.0B3 domain-containing protein At5g60130-like
RefseqXP_015071045.10.0B3 domain-containing protein At5g60130-like
TrEMBLM1AQ141e-175M1AQ14_SOLTU; Uncharacterized protein
STRINGSolyc01g106230.2.10.0(Solanum lycopersicum)
STRINGSolyc01g106250.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.16e-19B3 family protein