PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g048410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 317aa    MW: 34010.6 Da    PI: 6.4454
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g048410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.8e-15235270134
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C+ ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Sopen01g048410.1 235 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANKG 270
                       *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.6E-12100135IPR010399Tify domain
PROSITE profilePS5132014.818100135IPR010399Tify domain
PfamPF062009.8E-13103134IPR010399Tify domain
PROSITE profilePS5101713.126167209IPR010402CCT domain
PfamPF062034.7E-16167209IPR010402CCT domain
SMARTSM004012.7E-11229282IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-11230280No hitNo description
Gene3DG3DSA:3.30.50.103.1E-14233276IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.74E-14234282No hitNo description
PROSITE patternPS003440235262IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13235270IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.59239286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYGRETMNAA LHQDRHQQTQ IDDDDDDDVV AAVGGGGSGG GGIESMDNPT PHIRYDQHHH  60
SHSHALHNGG AGGSMEMNGV EGVSHNALYG PPSEIVPTAG SGASDQLTLS FQGEVYVFDA  120
VSPEKVQAVL LLLGGFEVPP GIPAVNVVPQ SQRASGDFPG RLNQPQRAAS LNRFREKRKE  180
RCFDKKIRYT VRKEVAMRMQ RKKGQFTSAK SIPDEVGSSA DWNEGSGQEE QETSCRHCNI  240
SSKSTPMMRR GPAGPRSLCN ACGLKWANKG ILRDLSKVPA PGTQDQTAKP GEQSHGEPNG  300
SDDMAAIITP DDNHPVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083699.10.0GATA transcription factor 24-like
SwissprotQ8GXL72e-78GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3Q7FBQ20.0A0A3Q7FBQ2_SOLLC; Uncharacterized protein
STRINGSolyc01g106030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-81ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]