 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen01g046900.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
GATA |
| Protein Properties |
Length: 265aa MW: 29234 Da PI: 6.3606 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen01g046900.2 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 32.5 | 1.2e-10 | 57 | 84 | 8 | 35 |
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
kTplWR gp ++ LCnaCG ++ +g+
Sopen01g046900.2 57 KTPLWRPGPTAKPVLCNACGSRWETRGT 84
8********99999*********99886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MDKQGPCCLC GIELSSDILL WFVGHQDGIG GFLLTGGGSA TKKYRGSEKE RGQGDCKTPL 60
WRPGPTAKPV LCNACGSRWE TRGTLDDYLP EHASKGKQSY QLPSEVKPHL IARDDQKLEV 120
GEEVSRQDGS SACLEEKMIH ISSLGSARSS SDKCMQMQET NDKDPHLNPY SAPRRKRSKL 180
TQSILSPAQR LKRTLDNNLQ APDFEIISDE DEPVTLIYAR NKYIPPNEIG LGAMLLVTPT 240
TTKERSTSLS AMEEDTVSFS MDVSK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975440 | 1e-176 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
