PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g046890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 250aa MW: 27361.9 Da PI: 4.5387 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 37.4 | 3.6e-12 | 22 | 51 | 6 | 35 |
GATA 6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 +kT lWR gp ++ LCnaCGl++r k++ Sopen01g046890.1 22 ESKTRLWRPGPTEKPVLCNACGLRWRTKET 51 579********99999**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.8E-4 | 9 | 69 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.2E-10 | 22 | 51 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-6 | 23 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.0E-9 | 23 | 51 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.96E-9 | 24 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEIPYLVAGG GERSGQQLAV QESKTRLWRP GPTEKPVLCN ACGLRWRTKE TLDDYVPKHG 60 STELPSEMNP DLLSRDDQKL EVGKEVSGQD GSSACLEEEM IKISSLGSAV SSPDKCMQME 120 ETNDKDPLPR RKISKPRHGI LSPAQIQRTL DNYLQGPDFE IISDEDEPVT LIYARTKYIP 180 PNEIGLGAML LVSPTTTTER STPLSAMAVP PNEIGHEPTL LVSPTTTIEH STPQSAMAED 240 TVSCSMDVSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769745.1 | 1e-156 | GATA transcription factor 26-like | ||||
TrEMBL | M1DU47 | 1e-111 | M1DU47_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094430 | 1e-112 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12582 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.2 | 1e-12 | GATA transcription factor 26 |