PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g046180.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 524aa MW: 56391.1 Da PI: 7.3998

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g046180.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.5	1.7e-40	136	239	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ Sopen01g046180.1 136 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAPpsksa 228 56799****************************************************************999877778887775555533333 PP TCP 89 ........kaaksaakskksqksaasalnla 111 + la Sopen01g046180.1 229 phsfhsalA--------------------LA 239 333333321....................22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-38	141	242	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	142	196	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQNQHQHQY QLLSQHHHHQ QQLQQQHGRS 60 SVPFMTSISI QPTAQAPITN SATNASPSTS SPTPPQPPHL VDASLAIATR SDTLVDPNKK 120 SQLAIQQTQH VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE 180 TIEWLLQQAE PAIIAATGTG TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA 240 AHQTPHPFEE GFSQMLGFHH NTHLLTQNPI AESIPGGGGS SGDGGGVGGQ EGADNYLRKR 300 YREDLFKEEG SSNQPGEASG GSTSPSNKQF KGNSPQLPNK PNSQEGVAGP SSNMLRHTNM 360 IPATGLWAVA PPPTSGTTGG SPFWMLPVTS GQTLSAPMAS TSGTTTLESQ MWPFPMGSSN 420 TIQAPLHFMP RFNIPPNLEF QSGRGNPLQL GSMLMQQQQP SQHLGLGMAE TNLGMLAALN 480 AYSRGGLNMN SDHQQTHSLD HHQQQQQHQP QPTDSDEDDP NNSQ

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQNQHQHQY QLLSQHHHHQ QQLQQQHGRS  60
SVPFMTSISI QPTAQAPITN SATNASPSTS SPTPPQPPHL VDASLAIATR SDTLVDPNKK  120
SQLAIQQTQH VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE  180
TIEWLLQQAE PAIIAATGTG TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA  240
AHQTPHPFEE GFSQMLGFHH NTHLLTQNPI AESIPGGGGS SGDGGGVGGQ EGADNYLRKR  300
YREDLFKEEG SSNQPGEASG GSTSPSNKQF KGNSPQLPNK PNSQEGVAGP SSNMLRHTNM  360
IPATGLWAVA PPPTSGTTGG SPFWMLPVTS GQTLSAPMAS TSGTTTLESQ MWPFPMGSSN  420
TIQAPLHFMP RFNIPPNLEF QSGRGNPLQL GSMLMQQQQP SQHLGLGMAE TNLGMLAALN  480
AYSRGGLNMN SDHQQTHSLD HHQQQQQHQP QPTDSDEDDP NNSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062151.1	0.0	transcription factor TCP8
TrEMBL	G3BGV1	0.0	G3BGV1_SOLLC; TCP transcription factor 11
STRING	PGSC0003DMT400064164	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-55	TCP family protein