PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g045590.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 672aa MW: 76906.4 Da PI: 8.4168

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g045590.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.5e-20	55	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY e+Ak +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel Sopen01g045590.2 55 EFYAEFAKGCGFSIRRHRTEGKaGVGKGLTRRYFVCHRAGNTPVKAANDSKPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHEL 147 6*************99887745667799************999******************99777789***********9 PP FAR1 90 a 90 Sopen01g045590.2 148 L 148 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-17	55	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-20	271	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	549	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	553	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MMGLYGDPSD QRSLSLDDTS STEESPDQTR LSLETTNDAV PYIGQRFPNH DAAYEFYAEF 60 AKGCGFSIRR HRTEGKAGVG KGLTRRYFVC HRAGNTPVKA ANDSKPQRNR KSSRCGCQAY 120 MRISKTTDLG VPEWRVTGFM NHHNHELLEP NQVRFLPAYR SISDADRNRI LMFAKTGISV 180 QQMMRLMELE KGVEPGYLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY 240 DFSLDSNNRL ENIAWSYASS IQSYDIFGDA VVFDTTHRLT AFDMPLGIWV GVNNYGMPCF 300 FGCVLLREES LRSYSWALKV FLAFMNGKAP QTVLTDQNMC LKEAINLEMP TTKHALCIWL 360 VVAKYPSWFN AVLGERYNEW KAEFNRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFA 420 LRSLWALPYL RSHFFAGMTT TGHSKSINAF IQRFLSAQSR LAHFVEQVAV TVDFKDQTGE 480 QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQM EDGFLVRHHT 540 KLEGGRKVYW VPREGIVSCS CHQFEFSGIL CRHALRVLST GNCFQIPERY LPHRWRRIST 600 PATKALQNTQ SDHTERVQLL QSMVSTLVTE SAKSRERLDI ATENVSILLS RIREQPISSQ 660 GIRESSSNQR NL

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MMGLYGDPSD QRSLSLDDTS STEESPDQTR LSLETTNDAV PYIGQRFPNH DAAYEFYAEF  60
AKGCGFSIRR HRTEGKAGVG KGLTRRYFVC HRAGNTPVKA ANDSKPQRNR KSSRCGCQAY  120
MRISKTTDLG VPEWRVTGFM NHHNHELLEP NQVRFLPAYR SISDADRNRI LMFAKTGISV  180
QQMMRLMELE KGVEPGYLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY  240
DFSLDSNNRL ENIAWSYASS IQSYDIFGDA VVFDTTHRLT AFDMPLGIWV GVNNYGMPCF  300
FGCVLLREES LRSYSWALKV FLAFMNGKAP QTVLTDQNMC LKEAINLEMP TTKHALCIWL  360
VVAKYPSWFN AVLGERYNEW KAEFNRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFA  420
LRSLWALPYL RSHFFAGMTT TGHSKSINAF IQRFLSAQSR LAHFVEQVAV TVDFKDQTGE  480
QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQM EDGFLVRHHT  540
KLEGGRKVYW VPREGIVSCS CHQFEFSGIL CRHALRVLST GNCFQIPERY LPHRWRRIST  600
PATKALQNTQ SDHTERVQLL QSMVSTLVTE SAKSRERLDI ATENVSILLS RIREQPISSQ  660
GIRESSSNQR NL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027773747.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3Q7EPN6	0.0	A0A3Q7EPN6_SOLLC; Uncharacterized protein
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]