PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g045590.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 679aa MW: 77648.2 Da PI: 8.2165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g045590.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.5e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY e+Ak +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel Sopen01g045590.1 62 EFYAEFAKGCGFSIRRHRTEGKaGVGKGLTRRYFVCHRAGNTPVKAANDSKPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHEL 154 6*************99887745667799************999******************99777789***********9 PP FAR1 90 a 90 Sopen01g045590.1 155 L 155 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-20	278	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	560	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSEEAGHMMG LYGDPSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPNHDAA 60 YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND SKPQRNRKSS 120 RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DADRNRILMF 180 AKTGISVQQM MRLMELEKGV EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE 240 KDPNFKYDFS LDSNNRLENI AWSYASSIQS YDIFGDAVVF DTTHRLTAFD MPLGIWVGVN 300 NYGMPCFFGC VLLREESLRS YSWALKVFLA FMNGKAPQTV LTDQNMCLKE AINLEMPTTK 360 HALCIWLVVA KYPSWFNAVL GERYNEWKAE FNRLYNLESV EDFELGWRDM VNSFGLHTNR 420 HIASLFALRS LWALPYLRSH FFAGMTTTGH SKSINAFIQR FLSAQSRLAH FVEQVAVTVD 480 FKDQTGEQQT MQQNLQNICL KTGAPMEAHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKLE GGRKVYWVPR EGIVSCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPH 600 RWRRISTPAT KALQNTQSDH TERVQLLQSM VSTLVTESAK SRERLDIATE NVSILLSRIR 660 EQPISSQGIR ESSSNQRNL

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSEEAGHMMG LYGDPSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPNHDAA  60
YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND SKPQRNRKSS  120
RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DADRNRILMF  180
AKTGISVQQM MRLMELEKGV EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE  240
KDPNFKYDFS LDSNNRLENI AWSYASSIQS YDIFGDAVVF DTTHRLTAFD MPLGIWVGVN  300
NYGMPCFFGC VLLREESLRS YSWALKVFLA FMNGKAPQTV LTDQNMCLKE AINLEMPTTK  360
HALCIWLVVA KYPSWFNAVL GERYNEWKAE FNRLYNLESV EDFELGWRDM VNSFGLHTNR  420
HIASLFALRS LWALPYLRSH FFAGMTTTGH SKSINAFIQR FLSAQSRLAH FVEQVAVTVD  480
FKDQTGEQQT MQQNLQNICL KTGAPMEAHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWVPR EGIVSCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPH  600
RWRRISTPAT KALQNTQSDH TERVQLLQSM VSTLVTESAK SRERLDIATE NVSILLSRIR  660
EQPISSQGIR ESSSNQRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062970.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3Q7EPN6	0.0	A0A3Q7EPN6_SOLLC; Uncharacterized protein
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]