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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g043700.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 666aa MW: 75699.6 Da PI: 6.6767 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.9 | 2.8e-112 | 286 | 657 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL++cA+a+++ d + a++lL r++e+++p+gd ++Rla+y+++AL+arl+++++ ly a +ps+ s ++ l+a+k+f ++P+ + Sopen01g043700.2 286 LRALLTQCAQAMANYDSRTANELLMRIREHSTPHGDGTERLAHYLANALEARLSGTGTALYTAYAPSRIS---AANILKAYKAFITACPFKLL 375 5789************************************************************999998...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s++ aN+ I + ++g+ ++HiiDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g + ++eetg+rL+k++++++vpf f++ +ak Sopen01g043700.2 376 SNIFANKYIRKVIAGAPKIHIIDFGILYGFQWPCLIQGLSMRAGGPPELRITGIDLPQPGfkPAGRVEETGRRLEKYCKRFNVPFVFKA-IAK 467 ***********************************************************9999**************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+++leeL+v+++E+l+Vn+ ++l +++de+v +s+rd+vL+l+++++P+++++ + n++ F++rf eal ++s+l+d++ea+lpr Sopen01g043700.2 468 KWESITLEELEVQRDEVLVVNSLYRLGNIPDETVIPNSPRDAVLNLIRRIRPDLFIHGALNGTFNTPFFVTRFREALFHFSSLYDMFEATLPR 560 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e+e+r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGFk+vpl+++++k ++ +r + + ++v+e+ +++++gWk+r ++++ Sopen01g043700.2 561 EDEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCVRAGFKQVPLDQEIVKIVRNKVRSEYHRDFSVDEDGHWMLQGWKGRVIYAL 653 ********************************************************************999********************** PP GRAS 371 SaWr 374 S+W+ Sopen01g043700.2 654 SCWK 657 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.988 | 260 | 637 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-110 | 286 | 657 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MEALFQEQLF PCADSFIFRH PSIPMDPRKE VIQNGVNNHP SFDQDYFSNH VVGVGDSSPP 60 PQEEGEKDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL QAKERYLSDV LHGSENNYSP 120 QSVIINPHDS SSFLSNYSPD SIESPQWDLN FESPASMSTL SNHDSFFTSF GNGHFEEGAV 180 NVFQSGSSSN SPTGLREKKN RHRGDVAADQ QRSNKQMATF VHDESEPLEM YDNVLLCLNN 240 PYVEQHSATS VTSYSPPNEA KKASKVGRPR GGRKHSSIVK KEMVDLRALL TQCAQAMANY 300 DSRTANELLM RIREHSTPHG DGTERLAHYL ANALEARLSG TGTALYTAYA PSRISAANIL 360 KAYKAFITAC PFKLLSNIFA NKYIRKVIAG APKIHIIDFG ILYGFQWPCL IQGLSMRAGG 420 PPELRITGID LPQPGFKPAG RVEETGRRLE KYCKRFNVPF VFKAIAKKWE SITLEELEVQ 480 RDEVLVVNSL YRLGNIPDET VIPNSPRDAV LNLIRRIRPD LFIHGALNGT FNTPFFVTRF 540 REALFHFSSL YDMFEATLPR EDEDRKLFEE EVFARDAMNV IACEGTERVE RPETYKQWQL 600 RCVRAGFKQV PLDQEIVKIV RNKVRSEYHR DFSVDEDGHW MLQGWKGRVI YALSCWKPTK 660 QSVKLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 8e-43 | 288 | 659 | 35 | 421 | Protein SHORT-ROOT |
5b3h_E | 8e-43 | 288 | 659 | 35 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058083.1 | 0.0 | scarecrow-like protein 33 isoform X1 | ||||
TrEMBL | Q00LP5 | 0.0 | Q00LP5_SOLLC; GRAS4 | ||||
STRING | Solyc01g100200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |