PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g041490.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 453aa    MW: 48594.8 Da    PI: 6.1255
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g041490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.31.3e-3490191197
            DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                       klfqrlw++eDei lL+G++d+++++g      + + d++afye++k + +++++k+qlveK+rrLKkK+++ v+k+ sgk+++f+++hdq +
  Sopen01g041490.1  90 KLFQRLWTDEDEIELLRGFLDYTTQRGLntsspQHHYDTTAFYEQIKTKFQLDFNKNQLVEKLRRLKKKYRTVVSKMGSGKDFVFKSAHDQVT 182
                       579************************9776433445******************************************************** PP

            DUF573  89 felskkiWg 97 
                       f++s++iW 
  Sopen01g041490.1 183 FDISNRIWS 191
                       ********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.4E-3392191IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDSVPNRHHQ ASYDNLDYEV DMDVEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG  60
KRPRIDDFAI PVVLPGAVKK PSAGFDESRK LFQRLWTDED EIELLRGFLD YTTQRGLNTS  120
SPQHHYDTTA FYEQIKTKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ  180
VTFDISNRIW STGGSYARSS PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY  240
HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA  300
APAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP  360
IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL GFGGGAMSME MMRDEKWRKQ  420
QMLELEVYSK RLELVQDQVK AQLEELRSMG SNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062587.10.0probable transcription factor At5g28040
TrEMBLA0A3Q7EMN30.0A0A3Q7EMN3_SOLLC; Uncharacterized protein
STRINGSolyc01g097890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-45DNA-binding storekeeper protein-related transcriptional regulator