PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g040560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 860aa    MW: 96964 Da    PI: 6.7854
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g040560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.29.7e-1764139190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +f+++YA++vGFs+ + + ++ k +g i++ +f Cske  r++++++              C+a+l++++++++ w+vtk++++HnH+++
  Sopen01g040560.1  64 NFFDAYARRVGFSIHVGQYSRAKPDGPIISWEFSCSKEILRRKNTES--------------CNAMLRIERKSSDGWVVTKFVEDHNHSIV 139
                       69*************************************99998777..............**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1364139IPR004330FAR1 DNA binding domain
PfamPF105514.1E-29279371IPR018289MULE transposase domain
PROSITE profilePS5096611.165556592IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-11557590IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MNNEVIDIEG QKRKKSGERA VEPNQNPKQG LPDNFTERDT IIEVDGEEKP YVGMEFQTEE  60
AAKNFFDAYA RRVGFSIHVG QYSRAKPDGP IISWEFSCSK EILRRKNTES CNAMLRIERK  120
SSDGWVVTKF VEDHNHSIVN PSKVHYLRPR KHFAGASKTV GEIPGAPTDI MVPPVVVPVD  180
GNHAFVSSNE GVKDAPPMES NRVTKNFSPV IPIMFIQPCS RKRTLGRDAH NLLDYFKKMQ  240
AENPGFYYAI QLDDENRMTN AFWADARSRI AYSHFGDAVI FDTMYRPNQF QVPFAPFTGV  300
NHHGQMVLFG CGLLLDESES SFTWLFRTWL SSMNNRPPVS ITTDQDRAIK AAVNLVLPGT  360
RHCICKWHIL REGQERLAHI YMAHPSFYGE LYSCINYSET IEDFESCWTS VLDKYDLGKN  420
EWLQAVYNAR DQWAPVYFRD TFFAALPSNQ GVTSFFDGYV NQQTTLPMFF KQYERALESS  480
LEREIASDFD TNCTAPMLRT PSPMEQQAAN LFTKKVFAKF QEELVETFAH TANKIDGDET  540
LSKFRVAKYE QDDKAYIVML NLAQMKASCS CQMFEYSGIL CRHILTVFTV TNVLTVPSLY  600
ILKRWTRNAK VGQGSDEDIV KQGINSLTSR FNYLCLEALR YAEEGAVSAE TFDAAVSALK  660
DGLRKISVVA KSVGKPLSSQ GSESTQDGSI KKTPATSDTI PSLWPWQDTM PRHFNLNDGG  720
LTAGDLNQPT MTPVAINHDG GLADNVVVYT CFKSMTWVIE NKSPASKVAV INLKLQDYGK  780
NPAGETEVQF RLTRVALEPM LKSMACISQQ LSLPANRVAV INLKLQDTKT PSGETEVKFQ  840
VSRDTLGSML RSMAYIREQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062522.10.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_027772558.10.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_027772560.10.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A3Q7EM510.0A0A3Q7EM51_SOLLC; Uncharacterized protein
STRINGSolyc01g096850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]