PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g040490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 152aa MW: 17572.3 Da PI: 9.9747 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54 | 3.1e-17 | 34 | 128 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk + + +s++lvlpk+f++++g+k +e +++d+ g+ W+v + +k+ ++ ++++kGW++F k + Lk g f++F +d++++ + Sopen01g040490.1 34 FFKLF--LSDQSSQQLVLPKDFCRKFGEKMKE--RSKIKDLCGNFWDVCI--EKSEDGvvTFIGKGWEDFIKYQSLKNGYFLIFIYDDERDSS 120 77777..77778888***********766544..46788***********..8888888899*************************887777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++vkvf++ Sopen01g040490.1 121 FTVKVFST 128 8****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-19 | 27 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-19 | 28 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-15 | 32 | 127 | No hit | No description |
PROSITE profile | PS50863 | 12.125 | 32 | 129 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-9 | 34 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-15 | 34 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEKRKVGRPR KNEEKGKVAV IGTSSPVNRR PPEFFKLFLS DQSSQQLVLP KDFCRKFGEK 60 MKERSKIKDL CGNFWDVCIE KSEDGVVTFI GKGWEDFIKY QSLKNGYFLI FIYDDERDSS 120 FTVKVFSTNG CKKSVPMTIQ KTKGKDHVIV VE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-178 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085268.1 | 1e-107 | putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A3Q7EM71 | 1e-102 | A0A3Q7EM71_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g096790.2.1 | 2e-57 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16006 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-16 | B3 family protein |