PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g040200.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 342aa MW: 37640.5 Da PI: 9.6828

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g040200.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.6e-16	41	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Sopen01g040200.1 41 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsarvNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 125 5*********************************9987778888999999**************99984.....57**9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-19	39	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDNEAANHHQ NHEISNKDEF SPRIKPLQNY HVPSDRLKRD EWSEGAVSCL LEAYEAKWIL 60 RNRAKLKGQD WEDVAKHVSA RVNSTKSPKT QTQCKNKIES MKKRYRSESA TAADASSWPL 120 YPRLDLLLRG NNASAASSSL IPPPLPPAAP PNTNCVIDAV EPPPQPPILL PPPPATLPPP 180 PLPPSPALPF GNGDQNSHGS NGLDRGIKED ILMDAKLSDN AAAPDQKNAT ATNSSSTPAL 240 YSDNKSKSKL RSKNKRKRAV EGWEIGESIR LLAEVVVRSE QARMETMRDI ERMRAEAEAK 300 RGEMDLKRTE IIANTQLEIA KLFASITKGS VDSSLRIGRS SS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDNEAANHHQ NHEISNKDEF SPRIKPLQNY HVPSDRLKRD EWSEGAVSCL LEAYEAKWIL  60
RNRAKLKGQD WEDVAKHVSA RVNSTKSPKT QTQCKNKIES MKKRYRSESA TAADASSWPL  120
YPRLDLLLRG NNASAASSSL IPPPLPPAAP PNTNCVIDAV EPPPQPPILL PPPPATLPPP  180
PLPPSPALPF GNGDQNSHGS NGLDRGIKED ILMDAKLSDN AAAPDQKNAT ATNSSSTPAL  240
YSDNKSKSKL RSKNKRKRAV EGWEIGESIR LLAEVVVRSE QARMETMRDI ERMRAEAEAK  300
RGEMDLKRTE IIANTQLEIA KLFASITKGS VDSSLRIGRS SS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063175.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A0V0I3C9	0.0	A0A0V0I3C9_SOLCH; Putative trihelix transcription factor GTL1-like
STRING	Solyc01g096470.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-92	sequence-specific DNA binding transcription factors