PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g039620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 19794.6 Da PI: 8.2335 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.7 | 3.6e-12 | 63 | 151 | 10 | 86 |
HHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 10 vlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +l+++r+ +p ++a++ +++ ++++++++d++g ++k++ +k+ +r v+ +GW++ v+ n+L gD + + + + Sopen01g039620.1 63 NLSLSRFLIPAECATNLlqhmteserekiQSDDDRGIDISVMDPKGDLHDMKFTEWKSLKRLVFNRGWNKLVENNQLHKGDLLSLWHYR 151 5677999*****996669999988887775555699**********999999999**************************99887554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-15 | 52 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-15 | 53 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.755 | 54 | 167 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.82E-11 | 55 | 165 | No hit | No description |
Pfam | PF02362 | 2.0E-9 | 63 | 149 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MRLFGVQFSP LNNNNMQQQQ QRDDRVMDMP DLLPPSLRLN IESVRGSESV YMGRKYLENS 60 DTNLSLSRFL IPAECATNLL QHMTESEREK IQSDDDRGID ISVMDPKGDL HDMKFTEWKS 120 LKRLVFNRGW NKLVENNQLH KGDLLSLWHY RSFNNKPCFA VNIIPKPKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081580.2 | 1e-124 | putative B3 domain-containing protein At5g35780 | ||||
TrEMBL | A0A3Q7EMI5 | 1e-112 | A0A3Q7EMI5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g095880.1.1 | 1e-113 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-09 | B3 family protein |