PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g033640.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 362aa    MW: 40597.2 Da    PI: 5.4261
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g033640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.27.5e-121051243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      +ien++ r+v++ kR +g l K  EL +LCd+e a ++ s+ 
  Sopen01g033640.1 10 FIENNTERKVSYRKRIKGFLTKVRELNILCDVEMATLVNSPY 51
                      8**********************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.465149IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-18296IPR002100Transcription factor, MADS-box
CDDcd002661.06E-15282No hitNo description
PRINTSPR004042.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-111051IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRKKVKLAF IENNTERKVS YRKRIKGFLT KVRELNILCD VEMATLVNSP YQNEPEIFPN  60
HEASTDLFTK FSNLPEEDKS KNMKTQENVI MKRIKKIEKE LEKVRQENKK MEYTNHMYGL  120
LNGEEMPNSK HPGYLNDLCY VINKHLKLID DSIEAKTHEE GSTSNAPQPF VGPMDSGGTN  180
FDISWAPLLA HVDDPVLSEI PLLVPSTVLG RTNFERPRAP FNLVPDVIPT SMVPLTAPLM  240
GPSSASAQVP EFMFPLKTPL PSDLSLVPSS SSSQRYPEIA YTMSSPMLVP PVAPQLDHSM  300
NILSMSASGP VENNVNDSFG IPKSPSFSEL LSFTDDEIQT LIDDTSFNTH VQDSNPHHNN  360
WI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769906.10.0uncharacterized protein LOC114075653
TrEMBLM1C7X31e-179M1C7X3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000617241e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.12e-26M-type_MADS family protein