PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g032970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 167aa MW: 18428.8 Da PI: 5.0581 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 9.7e-11 | 57 | 142 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 s ++lpkk +e + ++ + + + ++W++ + k++ ++ ++ W++Fv++n+LkegD +vF+l+ + s+ e++v+++ Sopen01g032970.1 57 KPSYSMYLPKKMRSELPSAGARAVP-AVLTCGQKKWDMSYGGVKSGHKFCIE--WRKFVDDNNLKEGDGLVFELVeCSaSKIEFRVQIL 142 5556677777776666333223322.3445577*******656666667777..*******************8855567777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-14 | 43 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-13 | 44 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.278 | 47 | 145 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.81E-13 | 50 | 143 | No hit | No description |
SMART | SM01019 | 3.5E-5 | 51 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.7E-9 | 55 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MESGSSFGRV SNHSHSYSTM KQPEIESSGI TEIDNGEYWP LSGKPYVDLI LTKTGVKPSY 60 SMYLPKKMRS ELPSAGARAV PAVLTCGQKK WDMSYGGVKS GHKFCIEWRK FVDDNNLKEG 120 DGLVFELVEC SASKIEFRVQ ILSGDFPAEL KPEDEEGANS DNPILLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-178 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-178 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229533.1 | 1e-121 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_015072506.1 | 1e-121 | B3 domain-containing protein Os06g0112300-like | ||||
TrEMBL | A0A3Q7EI37 | 1e-120 | A0A3Q7EI37_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g081400.2.1 | 1e-121 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-08 | B3 family protein |