PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g030830.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 781aa    MW: 87712.8 Da    PI: 6.4656
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g030830.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.72.4e-36147224178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv++Cead+se+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  Sopen01g030830.2 147 RCQVPDCEADISELKGYHKRHRVCLRCANATSVVLDGHSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 224
                       6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-27144209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.376145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-33146226IPR004333Transcription factor, SBP-box
PfamPF031107.3E-27148222IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MHNQPFSSSQ TGAPTELRNT QMISSLLSGD DPAASSNFDW SDLLDFDLHE QLSISFDDPL  60
HQEQQPETEF VAPVIPSSED SPQSQDTDAG RIRKRDPRMA CSNFLAGRIP CACPELDEKM  120
EEEEMAGIGP GKKRARTVRA SAGAGARCQV PDCEADISEL KGYHKRHRVC LRCANATSVV  180
LDGHSKRYCQ QCGKFHILSD FDEGKRSCRR KLERHNNRRR RKATDTSKTS AEKESQQLTM  240
ADDVSGDDDI VKDSTCMGSQ LGEKEILLES EGHVPICSTQ GIQNNHRDSF TASGETQVDA  300
EKENYKNSHS PSYYDNKSAL SSVCPTGRIS FKLYDWNPAE FPRRLRHQIF QWLASMPVEL  360
EGYIRPGCTI LTVFVAMPTF KWGKLLEDPA AHLYELIASP GNMLRGRGSF LIYLNNMVFR  420
VTKGENSVVK VKLKGPAPKL MSIYPTCFEA GKPMEFFACG SNLMQPRFRF LVSFGGRYLG  480
NDINVVPSDC KYEGDSSSTE HQLLKIHVPR TEADLFGPAF VEVENESGLS NFIPILVAEK  540
DICAEMKEIQ RKFCSGGSEC TSVCSPCEAS TSRKSEFSEF MLDVAWLLRE PSSENVQILA  600
SVQMQRFNYL LNILMESQST IILERVLSYF ENIVKRNMLA GITDADMTLF QKNILEKSIL  660
LKERLHLKEY FAGDSGQIMQ ELPNLQDTEV PHKHNIEFGP TYWERTSTVP LLDAELPLRV  720
KEQQSGKSCG FLVRKTLLTS RTLVFVISGF ALCLGLCATF LHPRKVGDIA MTIRRCLFDK  780
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-45143225183squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208220RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062016.10.0squamosa promoter-binding-like protein 7 isoform X2
TrEMBLA0A3Q7EHP40.0A0A3Q7EHP4_SOLLC; Uncharacterized protein
STRINGSolyc01g080670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7