PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g030710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22248.8 Da PI: 6.561 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.2 | 2.1e-23 | 14 | 61 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n++ rq tfskRr g++KKA+ELS+LC+a+v ++++s+++k+y + Sopen01g030710.1 14 RIQNQTSRQATFSKRRFGLFKKASELSTLCGADVGIVVYSPSNKVYSF 61 89********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.105 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-31 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.99E-34 | 7 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 7 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-27 | 7 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-26 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-20 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MRRPNNRRRI QIVRIQNQTS RQATFSKRRF GLFKKASELS TLCGADVGIV VYSPSNKVYS 60 FGHPSVESIV ERFLGEDPTA STNDRNPMII AQQNANEDEI NRKLNTLERE LEKEKKRGQT 120 LQALRTEPSH EKRSFSGLKS LFEALEAADE EVERVVSQLL EADEVFPYQT IGSALDPLIV 180 RENTSSNFGE GSSQSSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081073.1 | 1e-142 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-32 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A3Q7EI39 | 1e-131 | A0A3Q7EI39_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097135 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-24 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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