PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g024030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 114aa MW: 13172.2 Da PI: 9.5113 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.3 | 3.6e-07 | 16 | 59 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ie ++ r ++fs+R+n++l Ae L + ev v++fs+ gk Sopen01g024030.1 16 LIEFERARAISFSQRKNTLLQDAEKLAKQSGYEVGVMLFSPGGK 59 5788899*********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.068 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-9 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-16 | 8 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-6 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-10 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-6 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-6 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MENEIKKGKE KIELKLIEFE RARAISFSQR KNTLLQDAEK LAKQSGYEVG VMLFSPGGKP 60 FSCASTSIED IIGKFLKGKL EDHQRYHVEV KSIGFEELED LRKDLQTLNK KERR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079024.1 | 2e-77 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A3Q7I4P3 | 7e-40 | A0A3Q7I4P3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119680.1.1 | 7e-43 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 9e-11 | AGAMOUS-like 20 |