PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g010140.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 469aa    MW: 52428.8 Da    PI: 4.9032
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g010140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer262.2e-082172458
       ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                      ++Y++C  Nh       + D C+ f p  g  g+++ ++C  C CH n HRr ++
  Sopen01g010140.1 21 IVYRDC--NHCLLPSVSVADSCQAFAPG-GPIGSMEFFRCQFCHCHQNVHRRLNV 72
                      679999..899999999**********8.888********************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-41869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-72270IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152310.2322370IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF566722.67E-27231382No hitNo description
CDDcd016473.21E-27232370No hitNo description
Gene3DG3DSA:3.10.10.101.0E-5236296No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MANMLRANQG ARAICKPKDL IVYRDCNHCL LPSVSVADSC QAFAPGGPIG SMEFFRCQFC  60
HCHQNVHRRL NVSNHQLPPP TQQQTVTQRD VKTEESSNTK NANRLGRINA QLFDSPGVSI  120
ALAESIMARA TENWVNCNNK DAGNKRKKSW DEHVAEEYEK EKPQILANQL ELTLNMRSEN  180
GKNKKIKKDE DEKPDGFELV ESVSEVRIEE RQDVKELAAT IMNFDTDGIE DWMCLVQCIP  240
KKGGMTVVPN EKNELVPMRP VTEWGVCIDY RKLNVWTEND HFSMPVMDHM LDRLAGKAAT  300
LQHCMMSIFS DIVDTIEVFM DDFSLVGDSF DGHLSNLAEV LKRSEDCNLA LNWEKCHFMV  360
KEGIVLGHHI SEKGIEYNEE CTLTGSPSDA ASNSEEGSTS DSTSASTSWV GQIFWVKRSI  420
ASSSTSQGAT RIEDHDHQAS SEEATSSEYA LAPRVGEPAP VANEPNQCW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1579845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.16e-08homeobox protein 33