PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g009300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 20017.9 Da PI: 10.3304 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3e-20 | 104 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+WvAeIrd ++kr++lg+f ta+eAa a+++a+ +++g Sopen01g009300.1 104 KKYRGVRQRK-WGSWVAEIRDiR----MNKRHWLGSFPTADEAALAYDKAAIEIKG 154 59*******9.**********44....34***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.08E-28 | 104 | 160 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-27 | 105 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-31 | 105 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.732 | 105 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-18 | 105 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-14 | 105 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-9 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-9 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MASKDELHEN EVVKKPSKVV RGKKTNLMGD CSMVWPRVVR IYITDNDATD SSSDEEENHQ 60 GEKFKRQKRI CKEIIIKNGK TKVTSKMVSS KDKIDTKPHQ DNVKKYRGVR QRKWGSWVAE 120 IRDIRMNKRH WLGSFPTADE AALAYDKAAI EIKGPNALTN ILKLPPRESD PIHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-16 | 104 | 161 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-16 | 104 | 161 | 4 | 62 | ATERF1 |
3gcc_A | 7e-16 | 104 | 161 | 4 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769795.1 | 1e-127 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like | ||||
Swissprot | Q9SUE3 | 3e-30 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A097F7I6 | 7e-98 | A0A097F7I6_9SOLA; CRF7 | ||||
STRING | Solyc01g014720.1.1 | 1e-103 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-22 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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