PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g007270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 18544.7 Da PI: 4.1812 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.2 | 4.5e-11 | 5 | 64 | 36 | 99 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + le ++g+ Wev++ + ++g+++l+kGW++F+ + ++ +++F+++ s f +v ++++ Sopen01g007270.1 5 VFLEAPHGKAWEVEV--EMSQGQIWLAKGWNDFCAYYSISVRSILMFTYIPCSHF--HVAIYDQ 64 67999**********..*******************************9954666..9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.674 | 1 | 65 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-8 | 5 | 64 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-13 | 5 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-13 | 5 | 64 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.84E-10 | 5 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MLNPVFLEAP HGKAWEVEVE MSQGQIWLAK GWNDFCAYYS ISVRSILMFT YIPCSHFHVA 60 IYDQSRSEIE YPIHQDIEAD EEEEVIPVLQ DNASVIEEDI PVYIQANANV IEQDYPVEIR 120 PKYRYNQHGE YEAGYEEGAE WRVDIGYNRS KVQKIPTPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027767991.1 | 4e-80 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | K4AUF5 | 3e-61 | K4AUF5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g015210.1.1 | 4e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7499 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 1e-11 | B3 family protein |