PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen00g012080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 747aa MW: 84300.3 Da PI: 6.3372 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.5 | 8.1e-17 | 64 | 139 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA++vGFs+ + + ++ k +g i++ +f Cske r++++++ C+a+l++++++++ w+vtk++++HnH+++ Sopen00g012080.1 64 NFFDAYARRVGFSIHVGQYSRAKPDGPIISWEFSCSKEILRRKNTES--------------CNAMLRIERKSSDGWVVTKFVEDHNHSIV 139 69*************************************99998777..............**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-13 | 64 | 139 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.4E-29 | 279 | 371 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.165 | 556 | 592 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.2E-11 | 557 | 590 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.6E-8 | 567 | 594 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MNNEVIDIEG QKRKKSGERA VEPNQNPKQG LPDNFTERDT IIEVDGEEKP YVGMEFQTEE 60 AAKNFFDAYA RRVGFSIHVG QYSRAKPDGP IISWEFSCSK EILRRKNTES CNAMLRIERK 120 SSDGWVVTKF VEDHNHSIVN PSKVHYLRPR KHFAGASKTV GEIPGAPTDI MVPPVVVPVD 180 GNHAFVSSNE GVKDAPPMES NRVTKNFSPV IPIMFIQPCS RKRTLGRDAH NLLDYFKKMQ 240 AENPGFYYAI QLDDENRMTN AFWADARSRI AYSHFGDAVI FDTMYRPNQF QVPFAPFTGV 300 NHHGQMVLFG CGLLLDESES SFTWLFRTWL SSMNNRPPVS ITTDQDRAIK AAVNLVLPGT 360 RHCICKWHIL REGQERLAHI YMAHPSFYGE LYSCINYSET IEDFESCWTS VLDKYDLGKN 420 EWLQAVYNAR DQWAPVYFRD TFFAALPSNQ GVTSFFDGYV NQQTTLPMFF KQYERALESS 480 LEREIASDFD TNCTAPMLRT PSPMEQQAAN LFTKKVFAKF QEELVETFAH TANKIDGDET 540 LSKFRVAKYE QDDKAYIVML NLAQMKASCS CQMFEYSGIL CRHILTVFTV TNVLTVPSLY 600 ILKRWTRNAK VGQGSDEDIV KQGINSLTSR FNYLCLEALR YAEEGAVSAE TFDAAVSALK 660 DGLRKISVVA KSVGKPLSSQ GSESTQDGSI KKTPATSDTI PSLWPWQDTM PRHFNLNDGG 720 LTAGDLNQPT MTPVAINHDG GLADNVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015062522.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_027772558.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_027772560.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A3Q7EM51 | 0.0 | A0A3Q7EM51_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g096850.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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