PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g004350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 147aa    MW: 16826.6 Da    PI: 3.6971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g004350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-115623697
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      + le ++g+ Wev++  ++++g+++l+kGW++F++   + ++  ++F+++ r  f   v ++
  Sopen00g004350.1  5 VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSISVKSLLMFTYNPRCHF--PVAIY 62
                      67999**********..*******************************9877777..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.533165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-12565IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-8561IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-12572IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-9563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLNPVFLEAP HGKAWEVEVE NSQGQIWLAK GWSDFCDYYS ISVKSLLMFT YNPRCHFPVA  60
IYDQSATEIE YPIDQDIESD EQEEDILVAQ ANANVIDEDI LIVQSNANVI EEDIPILQSN  120
ANVIEDEEED IPVNWPQTKA NVIQQRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234716.18e-92B3 domain-containing transcription factor VRN1-like
RefseqXP_025884623.18e-92B3 domain-containing protein At1g49475-like
RefseqXP_025886111.18e-92B3 domain-containing protein At1g49475-like
TrEMBLA0A3Q7FGM03e-90A0A3Q7FGM0_SOLLC; Uncharacterized protein
STRINGSolyc03g043580.1.12e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-12B3 family protein