PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_213500_xoxo.t1
Common NameSOVF_213500
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 160aa    MW: 17600.2 Da    PI: 10.5709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_213500_xoxo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-201160255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  Sp_213500_xoxo.t1 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 60
                       7********.**********883....5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-261067No hitNo description
SuperFamilySSF541712.55E-221169IPR016177DNA-binding domain
PROSITE profilePS5103222.6691168IPR001471AP2/ERF domain
SMARTSM003801.5E-361174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-311169IPR001471AP2/ERF domain
PfamPF008472.8E-131160IPR001471AP2/ERF domain
PRINTSPR003674.5E-111223IPR001471AP2/ERF domain
PRINTSPR003674.5E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTSNPNRTEA HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARSLRG  60
IKAKTNFPLL SPPPPPPPPP PPLPPSPLSL DLNLCPSTTT WTAVSPHQGR FVEYLRNAAV  120
PVVRVVSDVG PRNEGLGLGL GLRSQRGLGF DLNEPPPVWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-221169261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-221169564ATERF1
3gcc_A6e-221169564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726490.15e-66ethylene-responsive transcription factor 12-like
SwissprotQ94ID61e-38ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0K9Q8W61e-109A0A0K9Q8W6_SPIOL; Uncharacterized protein
STRINGXP_010686418.19e-46(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-37ERF domain protein 12