PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_211390_waxk.t1
Common NameSOVF_211390
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 408aa    MW: 46863.9 Da    PI: 5.1575
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_211390_waxk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35161072102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +l
  Sp_211390_waxk.t1  16 FLTKTYEMVDDPTSDSIVSWSSSNKSFIVWNPPEFSRVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFIRGQSHL 98 
                        9***************************************************************9998.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Sp_211390_waxk.t1  99 LKNIHRRKP 107
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.2E-3813105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMMDEIQGGS NALPPFLTKT YEMVDDPTSD SIVSWSSSNK SFIVWNPPEF SRVLLPRFFK  60
HNNFSSFIRQ LNTYGFRKVD PEQWEFANDD FIRGQSHLLK NIHRRKPVHS HSLTNLHGQV  120
NSNPLTDSER KKYKEDIERL KHEREFLLAE SKRQREEEQG FESQVQLVRE RLHEMEQRQH  180
TFVSFFARIL KKPELAFAVP QVENHDRKRR VSSRHDYMHD ETSNEDSLGT LRISRRGSPD  240
DVSGLDLDTE LLERMESSLN FWENVVEDLE DVYVQKNSSI ELAESTTCVE SPAISYTQLN  300
VDAPSNSSAI DMNSEPPATV SVVACLPKEQ EAGTAPAAPQ GVNDVFWEQF LTENPGSSDV  360
QEVQSERKDP GLKEKDSRLI DHGRYWLGFR NANNLPEHIG QLTSAGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24910522129Heat shock factor protein 1
5d5v_B1e-24910522129Heat shock factor protein 1
5d5v_D1e-24910522129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866187.10.0heat stress transcription factor A-4c-like
SwissprotO494031e-117HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0K9Q7L20.0A0A0K9Q7L2_SPIOL; Uncharacterized protein
STRINGXP_010665682.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-119heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]