PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_210810_kdsc.t1
Common NameSOVF_210810
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 299aa    MW: 32546.5 Da    PI: 8.2217
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_210810_kdsc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.51.9e-17133187256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++t +q   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Sp_210810_kdsc.t1 133 RKKLRLTLDQSALLEESFKQQSTLNPKQKLALADRLNLRPRQVEVWFQNRRARTK 187
                        77889999*********************************************98 PP
2HD-ZIP_I/II118.24.6e-38133221190
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        +kk+rl+ +q++lLEesF+++++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+L++++++l++en+rL+ke +eL+ +
  Sp_210810_kdsc.t1 133 RKKLRLTLDQSALLEESFKQQSTLNPKQKLALADRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLRKCFETLTDENRRLQKELQELK-A 221
                        69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17112190IPR009057Homeodomain-like
SuperFamilySSF466891.41E-17119190IPR009057Homeodomain-like
PROSITE profilePS5007116.633129189IPR001356Homeobox domain
SMARTSM003896.9E-15131193IPR001356Homeobox domain
CDDcd000861.09E-14132190No hitNo description
PfamPF000467.0E-15133187IPR001356Homeobox domain
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
SMARTSM003405.9E-24189232IPR003106Leucine zipper, homeobox-associated
PfamPF021839.3E-10189223IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDSHSHSKYQ IQDQALTLGL GISSSSSLLS SKTKQVQVSI PSAATSSCYH HHEPSLTLSL  60
SGDTYTTDTP IATPVKVVEP PCSGGGGVSV VSVKRERESA CSSDDLEIER GGGSSRISDE  120
DEDGSAGPTN TPRKKLRLTL DQSALLEESF KQQSTLNPKQ KLALADRLNL RPRQVEVWFQ  180
NRRARTKLKQ TEVDCEHLRK CFETLTDENR RLQKELQELK ALKLGQPFYM HLPTAAAAAL  240
TMCPSCERIG ASVPTIQGTP TTTSTSTTTN ASNKGTPFTL GLSKSHFYPS PHQIPSFTC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858627.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-68HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0K9Q7R00.0A0A0K9Q7R0_SPIOL; Uncharacterized protein
STRINGXP_010680788.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-57HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]