PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_209620_ffcc.t1 | ||||||||
Common Name | SOVF_209620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 33113.2 Da PI: 6.9694 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.8 | 3.9e-44 | 1 | 119 | 12 | 129 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 eel+++yLkkkv+ +k++l +vi+++d++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk+++s +++ + Sp_209620_ffcc.t1 1 EELLQYYLKKKVAFEKIDL-DVIRDIDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKTIHS-NNKRI 90 79*****************.9***************952444443456**************************************.9999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g++ktLvfykgrap+gek+dW+mheyrle Sp_209620_ffcc.t1 91 GMRKTLVFYKGRAPHGEKSDWIMHEYRLE 119 ***************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 5.6E-20 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-47 | 1 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.71 | 1 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
EELLQYYLKK KVAFEKIDLD VIRDIDLNKL EPWDIQEKCK IGSGPQNDWY FFSHKDKKYP 60 TGTRTNRATV AGFWKATGRD KTIHSNNKRI GMRKTLVFYK GRAPHGEKSD WIMHEYRLED 120 CTTTVTIQES CLTEDGWVIC RVFKKKNYQK AIESPRSTDE NQQSQVLNYS SKKVFDHIFS 180 CMGKFDCPTT DETSTATITN IIPSFNISNS QTGVFDDQYN NHLPMLTCSS SSSPPFDDHN 240 NHALFKCSDV SPPRLSDWMS LDRLIASQLN GCQDDQDLIC SNSVMFHG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-42 | 1 | 147 | 26 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855488.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 7e-90 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0K9QA32 | 0.0 | A0A0K9QA32_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010676921.1 | 1e-120 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 3e-92 | NAC family protein |