PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_198230_yrna.t2 | ||||||||
Common Name | SOVF_198230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | AP2 | ||||||||
Protein Properties | Length: 478aa MW: 51998.7 Da PI: 8.106 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 145 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sp_198230_yrna.t2 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194 78*******************......55************************997 PP | |||||||
2 | AP2 | 39.3 | 1.6e-12 | 238 | 287 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ + + Sp_198230_yrna.t2 238 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIQCN 287 79********.7******5553..2.26**********99*********98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-15 | 145 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-9 | 145 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 146 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 146 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.38E-11 | 146 | 204 | No hit | No description |
PROSITE profile | PS51032 | 17.82 | 146 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-16 | 238 | 297 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.40E-24 | 238 | 298 | No hit | No description |
Pfam | PF00847 | 2.5E-8 | 238 | 288 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.369 | 239 | 296 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-30 | 239 | 302 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 239 | 297 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 240 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 278 | 298 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MNDEGSATNT ELSGTSSASS LVNATAEESP ISGAGEFDFF SKHSSADVSP FVTRQLFPMN 60 EGDNGGGSVG YDGGGDGTRE MELLRLGSSS STPRSMPTNH NSNSNQWLNL SVLGSGPGSG 120 VGTEQQNNAK QQVRRSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA 180 AARAYDRAAI KFRGVDADIN FTIADYEDDM KQQMKNLSKE EFVHILRRQS TGFSRGSSRY 240 RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIQCNGRE AVTNFESSSY 300 QGQIPIMQPN NQGDGQNLDL NLGISITIDK GAGESQPHHP PLHLPNGNWP ANGSYFIPGA 360 PQLYGQPLAS RQSTPMWSGL PPGRPATYEE RVSDQQKLEA IAGSARLPNW GWYMQNQGGQ 420 GGGSGGTANQ VQQLSNAASS GFSSFSTTTT SSANYPFTTL HNDFHNNNNN NNNHTQGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865445.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | B8AXC3 | 9e-98 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A0K9QBF8 | 0.0 | A0A0K9QBF8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693088.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-94 | related to AP2.7 |