PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_197950_fmps.t1 | ||||||||
Common Name | SOVF_197950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 39436.5 Da PI: 4.3692 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.8 | 5.4e-16 | 5 | 150 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv...ePwdLpk.....kvkaeekewyfFsk....rdkkyatgkrknratk 79 l+pGf+F+Ptdeel++++L +k++g ++++ ++++++y +P+++ ++e++ yfF++ ++kk +gk+ r++ Sp_197950_fmps.t1 5 LMPGFQFDPTDEELINFFLWRKIHGVPTPAVYPrMPDANVYGKkgdHPSQIFDsfgesDREEEDTVRYFFTRlvpvSKKKGCNGKNVVRSVG 96 689************************88866669999999755559***96334433222344455***9733223444458889999877 PP NAM 80 sg..yWkatgk.dkevlsk...kgelvglkktLvfykg.rapkgektdWvmhey 126 sg +W++ + + +v++k ++ ++g ++ L f ++ ++ + +W m e Sp_197950_fmps.t1 97 SGddFWRNERSeSVKVKNKdggQDIKIGSRTYLKFIDQtGVANPDRVEWSMREL 150 66337*97765155666666655566**********552667789******995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-18 | 2 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.704 | 5 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-12 | 7 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSMNLMPGFQ FDPTDEELIN FFLWRKIHGV PTPAVYPRMP DANVYGKKGD HPSQIFDSFG 60 ESDREEEDTV RYFFTRLVPV SKKKGCNGKN VVRSVGSGDD FWRNERSESV KVKNKDGGQD 120 IKIGSRTYLK FIDQTGVANP DRVEWSMREL MSTDDNALVL CRIEKKIPKS TTKKRKQAIS 180 STTNSTSIVD NNVDEDLLQE NKRQCLVHLQ LQQSTDQEQQ TKEMIDNDNS DLWLKQMIDD 240 YLQKSDNLNS STTTTQVNID NPECVISIQD LQNSQTSPNN QENERNTATS SSVDEGNNII 300 SYLDLLNSDD QKLNDDYPQI NQQVVRGDDD DNLCWEDLGD LLANPT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 175 | PKSTTKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021843047.1 | 5e-64 | uncharacterized protein LOC110783060 | ||||
TrEMBL | A0A0K9QBJ4 | 0.0 | A0A0K9QBJ4_SPIOL; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-09 | NAC domain containing protein 50 |