PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_197880_ytio.t1
Common NameSOVF_197880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 415aa    MW: 45208 Da    PI: 8.7625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_197880_ytio.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.7e-122751226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       +++ C+f++rtG C++G++C+F+H+
  Sp_197880_ytio.t1 27 GEPDCSFYLRTGLCRFGSTCRFNHP 51
                       6899********************8 PP
2zf-CCCH40.44.9e-137297227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       ++++C++f++tGtCk+G++CkF+H++
  Sp_197880_ytio.t1 72 GQPECQYFLKTGTCKFGATCKFNHPK 97
                       5799********************96 PP
3zf-CCCH382.8e-12119143327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +++rtG+Ck+G++CkF+H++
  Sp_197880_ytio.t1 119 EPECAYYLRTGQCKFGSTCKFHHPQ 143
                        799********************97 PP
4zf-CCCH382.8e-12276302127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++++tG Ck+G+ C+F+H++
  Sp_197880_ytio.t1 276 PGQPECQYYMKTGDCKFGAVCRFHHPR 302
                        5789*********************96 PP
5zf-CCCH40.25.6e-13322348127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC f++r+G+Ck+G++CkF H++
  Sp_197880_ytio.t1 322 PGEPLCIFYSRYGICKFGPNCKFDHPM 348
                        589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-62552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6242553IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-92751IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53053IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-43150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7417098IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-77097IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-107297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-67499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-57696IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817116144IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10119143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6119144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4122142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493275303IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6275302IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-9277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6279305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5281303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84321349IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7321348IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MWPVNIRTTE AMDAGIYPPG PYPEREGEPD CSFYLRTGLC RFGSTCRFNH PSNRKLALAT  60
ARMKGEFPER TGQPECQYFL KTGTCKFGAT CKFNHPKDKA GIAGRVPVNV LGYPLRPNEP  120
ECAYYLRTGQ CKFGSTCKFH HPQPSASFRG SSVYPPVQSP TTPGQQSYPG GLTNWPLTRA  180
SIIPSPRWQG PSSYTPLILP QGVVSVPGWN AYMGQMGSAS ADGQQQTAGN SPGYGTARQS  240
ESAISASPGA YSSYRSGSIP MGYYALQRDN VFPERPGQPE CQYYMKTGDC KFGAVCRFHH  300
PRERLVPAPD CLLSALGLPL RPGEPLCIFY SRYGICKFGP NCKFDHPMGI FAYNVSPTST  360
DASAMRRYLG SSSAAGSLTL TSDGLVETGP GKARRLSLSE SRDIQSGDDN VETDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851879.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0K9QBJ80.0A0A0K9QBJ8_SPIOL; Uncharacterized protein
STRINGXP_010673925.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-162zinc finger protein 1