PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_197080_wmsc.t1 | ||||||||
Common Name | SOVF_197080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 90aa MW: 10362.7 Da PI: 9.3615 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.3e-08 | 21 | 58 | 18 | 55 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + ++L++l+P+ + + +s K+s + +L+++++YI++Lq Sp_197080_wmsc.t1 21 QLVSKLQQLVPEvR-QRRSDKVSASKVLQETCNYIRNLQ 58 55689*******65.9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.499 | 3 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.22E-8 | 18 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-8 | 19 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-6 | 21 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MSSRRSRQSG SSRISDDQII QLVSKLQQLV PEVRQRRSDK VSASKVLQET CNYIRNLQRE 60 MDDLSDRLSQ LLTTVDADSE EARIIRSLLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021861076.1 | 2e-55 | transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 6e-38 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A0K9QDA7 | 5e-54 | A0A0K9QDA7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693223.1 | 3e-45 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 2e-34 | bHLH family protein |