PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_196630_pyjn.t1

Common Name

SOVF_196630

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 763aa MW: 87244.3 Da PI: 6.9907

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_196630_pyjn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 +fY++++k++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w+vt + ++HnHe Sp_196630_pyjn.t1 63 EFYCSFSKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGHPQAKPTEEGKLQRNRKSSRCGCQAYMRIVKRSdfdVPEWRVTGFCNNHNHE 154 6*************9998874556679***************99**************99998776789*********** PP FAR1 89 la 90 l Sp_196630_pyjn.t1 155 LL 156 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-16	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-19	279	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.4E-7	558	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-4	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MMQEMTKTGN QDIESSENDT DLSQDIIGSV EEIPEDTILS RQTSVNLVPF VGQRFVSQDA 60 AYEFYCSFSK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGHPQAKPTE EGKLQRNRKS 120 SRCGCQAYMR IVKRSDFDVP EWRVTGFCNN HNHELLKSIE VHILPSQCTI SADDKSRICL 180 FAKAGMSARQ MLRLMEIEKG VKLGCLPYTE LDIRNLLQSF RHVDRDNDAI DLVNMCKRLK 240 DENSDFKYDF KLDGHNRLEH IAWSYPSSIQ KYEAFGDAIV LNTTHRLDAY DMLLGLWIGV 300 DNHGMACLHS CVLLRDENLL SYTWALKTFL CFMKGKAPQT ILTDQNMWLK EAISCEMPDT 360 KHAFSIWHIM ANLSDWFSLP LGSHYDGWKT EFYRLYSLEV VDEFEAGWKE MVDRYGLQSN 420 KHTICLYALR HFWALSYLRH YFFAGLMSRS VTDSVNAFIQ RILSAQSKLD CFIDEVASIA 480 EYNDNSGSKL KMQQKVQKVS LKTGSPVESH AATVLTPFAF SLLQEQLVLA PQYASVMVDK 540 GCFHIRHHTE MDGGCKVMWD PSQELIHCSC HQFEYSGIIC RHILRVLSTN NCFHIPDTYL 600 PLRWNLVSKE NIEKDRMEQV KILESLASTI VSESVITEER LTFACEQMSM VLSHVKQLPR 660 LNDHHHHQHQ HANEIGFNSP SGPLIIPEGP DSEGIVQSFT LGNLHEANLG KLKEQNPNSG 720 IDYIMSKKRR RCSTPCCGQY PHNACECRTG SNLHADRDAS GFL

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MMQEMTKTGN QDIESSENDT DLSQDIIGSV EEIPEDTILS RQTSVNLVPF VGQRFVSQDA  60
AYEFYCSFSK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGHPQAKPTE EGKLQRNRKS  120
SRCGCQAYMR IVKRSDFDVP EWRVTGFCNN HNHELLKSIE VHILPSQCTI SADDKSRICL  180
FAKAGMSARQ MLRLMEIEKG VKLGCLPYTE LDIRNLLQSF RHVDRDNDAI DLVNMCKRLK  240
DENSDFKYDF KLDGHNRLEH IAWSYPSSIQ KYEAFGDAIV LNTTHRLDAY DMLLGLWIGV  300
DNHGMACLHS CVLLRDENLL SYTWALKTFL CFMKGKAPQT ILTDQNMWLK EAISCEMPDT  360
KHAFSIWHIM ANLSDWFSLP LGSHYDGWKT EFYRLYSLEV VDEFEAGWKE MVDRYGLQSN  420
KHTICLYALR HFWALSYLRH YFFAGLMSRS VTDSVNAFIQ RILSAQSKLD CFIDEVASIA  480
EYNDNSGSKL KMQQKVQKVS LKTGSPVESH AATVLTPFAF SLLQEQLVLA PQYASVMVDK  540
GCFHIRHHTE MDGGCKVMWD PSQELIHCSC HQFEYSGIIC RHILRVLSTN NCFHIPDTYL  600
PLRWNLVSKE NIEKDRMEQV KILESLASTI VSESVITEER LTFACEQMSM VLSHVKQLPR  660
LNDHHHHQHQ HANEIGFNSP SGPLIIPEGP DSEGIVQSFT LGNLHEANLG KLKEQNPNSG  720
IDYIMSKKRR RCSTPCCGQY PHNACECRTG SNLHADRDAS GFL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848384.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0K9QE15	0.0	A0A0K9QE15_SPIOL; Uncharacterized protein
STRING	XP_010670905.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]