PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_190610_kzew.t1
Common NameSOVF_190610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 342aa    MW: 38732 Da    PI: 5.8083
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_190610_kzew.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.22.9e-22137197259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++WrKYGqK + ++++pr+YYrCt++   gC+++k+v++ +e+p   + +Y+geH+++
  Sp_190610_kzew.t1 137 DDGHAWRKYGQKGILNTDYPRNYYRCTHKhdqGCQATKHVQQISENPIKYKLIYQGEHTCK 197
                        8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-23123198IPR003657WRKY domain
PROSITE profilePS5081120.059131194IPR003657WRKY domain
SuperFamilySSF1182904.97E-22133197IPR003657WRKY domain
SMARTSM007741.4E-31136198IPR003657WRKY domain
PfamPF031061.6E-22137197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQVISKVEQP ISPKNDLMEN ISNHLERGQE SAHQIRSFIN ERLGLKAEDR DALDRHSLMT  60
LNSFQTVLSM LKASGFDQDE NFMINNNKRK VDVLECLDQC KSEEISGGSC LSKEKRGCYK  120
RRKSGQSWTT EVTNLTDDGH AWRKYGQKGI LNTDYPRNYY RCTHKHDQGC QATKHVQQIS  180
ENPIKYKLIY QGEHTCKNLH KTPSIILDES PEENSSFYLS FQTNNFPLAK RALNPSLFPT  240
SAFNATTSSS MIKQEYTPIK VDSPPPVYNQ YSSSSDNCPP SSSDITSIGL PSTPVSEQGD  300
VISSAEIYSS TPSPYERDDD LFSLLLPSDH QYASLDDFWE TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19132197569OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867482.10.0probable WRKY transcription factor 70
TrEMBLA0A0K9QFD50.0A0A0K9QFD5_SPIOL; Uncharacterized protein
STRINGXP_010683475.11e-119(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-28WRKY DNA-binding protein 70