PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_189310_yjap.t1
Common NameSOVF_189310
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 986aa    MW: 114824 Da    PI: 8.0848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_189310_yjap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.3e-07227246625
                        -SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                        C+f+++tG C++G+rC++ H
  Sp_189310_yjap.t1 227 CPFHLKTGVCRFGARCSRVH 246
                        ******************99 PP
2zf-CCCH26.51.1e-08356383126
                        --S---SGGGGTS..--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                        ++ ++C  ++++   tC++G+ C+F+H+
  Sp_189310_yjap.t1 356 WRVAICGEYMKSRlkTCSRGSACNFIHC 383
                        6789***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.22221249IPR000571Zinc finger, CCCH-type
SMARTSM003561.9222248IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5226246IPR000571Zinc finger, CCCH-type
PRINTSPR018487.1E-36227246IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.1E-36246266IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3302.5E-23252351IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.138253353IPR000504RNA recognition motif domain
CDDcd125403.57E-46254352No hitNo description
SMARTSM003610.0061266349IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018487.1E-36282297IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.0E-14287353IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018487.1E-36310332IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.1E-36337361IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010311.103355385IPR000571Zinc finger, CCCH-type
SMARTSM003560.038355384IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6356383IPR000571Zinc finger, CCCH-type
PRINTSPR018487.1E-36375387IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    Send to blast
MAVMEENQQK EVEREIDEKT INPDDSTMAT MSRKEKRKAM KKMKRKQVRK EIAVKEREEE  60
EARLNDPEEK MRLLRLEQEE AERMERERLE FEERERQFLQ ALEMEKKRRE EEEEEQRKLE  120
EEESQRKLVN NENANDADED DDWEYIEDGP AEIIWKGNEI IVKKKKVRVP KKAPDILKEK  180
QESERPISNP LAPQSEVFED YKSAQDALES VAQQVPNFGT EQDKAHCPFH LKTGVCRFGA  240
RCSRVHFYPD KSCTILIKNM YNGPGLAWEQ DEGLEHTEEE VERSFVDFYE DVHTEFLKFG  300
ELVNFKVCKN GSSHLRGNVY VHYKSLESAM LAYQSTNARY FAGKLLTCEF INITRWRVAI  360
CGEYMKSRLK TCSRGSACNF IHCFRNPGGD YEWADWDKPA PRYWLKDMAA LFGYTGDSYT  420
DEVSPRYHSR RSRSRSPHRR SFSDEDDGHR RSRGRRSPHR EKRISQDYHC SKHRETDNAK  480
VDGAKRSSRK RERERESSRQ DSKSRKVEAV SATVESAEGC ASDKYLEHKS RSRRKSAVES  540
VHECHHEKVD KYDQEKSFYA DKYHDKFNRH KDKCVVQKEA DSLNFESHGD SQDSDEDGHH  600
SRSKKDMRRM KDDADSSGSA SDESRLVKVE KRQQKKRGKS SRLKNKTRVA DIGCDRDSRE  660
TYEDRQHRHH DKSPRKMKNI SESADGRDRL GKDDKRPQKK VRKCSMLMNQ SGFTDTESDM  720
DEDRHHRHSK QHSKNVGNDV ASDDALDGDR LGRSEKSSRK SRSSRSKKES DLTDKKTNRE  780
RIDEEERHCG DRSAKHHIKE PSLSKADSKT HRRSGKADVG TFVTDDRCRS SRAYLAPNHH  840
AEQENTGDRY RGTCDQTAKL VLSRFNDGDK RHDSSYRDST SVRDHKRCDE EDTASGKLET  900
SSVHVHTNCE GIGDEAEAEL EKACRYAALK KLEEIRMHKD IQAANSREPI ASLKNCTQEN  960
IFIGVLEKAD SSKVDISDAS IKRRRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A1e-322183829167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1981985KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839340.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A0K9QFS80.0A0A0K9QFS8_SPIOL; Uncharacterized protein
STRINGXP_010688468.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-145C3H family protein