PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_186530_nghm.t1

Common Name

SOVF_186530

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TALE

Protein Properties

Length: 692aa MW: 75955.9 Da PI: 6.9464

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_186530_nghm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	364	401	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Sp_186530_nghm.t1 364 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 401 554459******************************88 PP
2	BELL	111.1	6.3e-36	221	292	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk+kL+++l+e ++rY+qy++q+q+v sFe++ag+gsak Yt+lAlk+iS++FrcLkdai +qi Sp_186530_nghm.t1 221 ERQEIQMKKSKLVTMLDEAEQRYRQYNHQMQIVRESFEQAAGMGSAKTYTALALKTISKQFRCLKDAIQGQI 292 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.0E-54	148	290	IPR006563	POX domain
Pfam	PF07526	4.5E-46	151	288	IPR006563	POX domain
PROSITE profile	PS50071	12.115	342	405	IPR001356	Homeobox domain
SMART	SM00389	6.3E-10	345	409	IPR001356	Homeobox domain
CDD	cd00086	1.22E-11	345	406	No hit	No description
SuperFamily	SSF46689	3.94E-17	346	412	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-29	348	411	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	362	401	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MAAYYQNHHN NHGTSTEIQD HNTNNFHTLI LMNPNLAQQQ QQHQHQQQQQ QQQQQQQQLQ 60 SSNNILLLNS VAAGLSPNQP LLPQHHFVRL PTSPPQPSNV TLYGYPSHEA RDMPRARQGL 120 SLSLSSQNPG LRVGSQQGGE GGGDGGGQGF VLGSKYLKAA QELLEEVVHV GDDGGALFKN 180 SSTTTNNNND GSPKKGNKGG AAEFPSEERE KHGGGQLSTA ERQEIQMKKS KLVTMLDEAE 240 QRYRQYNHQM QIVRESFEQA AGMGSAKTYT ALALKTISKQ FRCLKDAIQG QIRAANKILG 300 DDQEGGSGSS AGGKIEGSRL KYIDHQIRQQ RALQQLGMIQ NPNAWRPQRG LPERSVSVLR 360 AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMIEEM YTEELKDQEH 420 NNGLSEEKLG SSSKENSNND ENNNNNNAGG LNSIKNQEIK MNNIAENHQV HACKDQNNPA 480 ASASASASAS ASAGVGIQTN SATPFKGSLT QSQLHGFSFT SSLDMEGGIS QRSPKRPRND 540 DEVLGYDEST NGEIMIKFGN EKEERQNVNG YPIISGGMNF IGMGGGDLGG AYPIGEISRF 600 ETEDFTQTPR FLHGNGISLS LGLPPSCENQ LDNLSTTNHT FMSPNPNIQF RRPNDFGSMS 660 SPSSHSPAAA FECIDIQNRK GFAAQLLPDF VA

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MAAYYQNHHN NHGTSTEIQD HNTNNFHTLI LMNPNLAQQQ QQHQHQQQQQ QQQQQQQQLQ  60
SSNNILLLNS VAAGLSPNQP LLPQHHFVRL PTSPPQPSNV TLYGYPSHEA RDMPRARQGL  120
SLSLSSQNPG LRVGSQQGGE GGGDGGGQGF VLGSKYLKAA QELLEEVVHV GDDGGALFKN  180
SSTTTNNNND GSPKKGNKGG AAEFPSEERE KHGGGQLSTA ERQEIQMKKS KLVTMLDEAE  240
QRYRQYNHQM QIVRESFEQA AGMGSAKTYT ALALKTISKQ FRCLKDAIQG QIRAANKILG  300
DDQEGGSGSS AGGKIEGSRL KYIDHQIRQQ RALQQLGMIQ NPNAWRPQRG LPERSVSVLR  360
AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMIEEM YTEELKDQEH  420
NNGLSEEKLG SSSKENSNND ENNNNNNAGG LNSIKNQEIK MNNIAENHQV HACKDQNNPA  480
ASASASASAS ASAGVGIQTN SATPFKGSLT QSQLHGFSFT SSLDMEGGIS QRSPKRPRND  540
DEVLGYDEST NGEIMIKFGN EKEERQNVNG YPIISGGMNF IGMGGGDLGG AYPIGEISRF  600
ETEDFTQTPR FLHGNGISLS LGLPPSCENQ LDNLSTTNHT FMSPNPNIQF RRPNDFGSMS  660
SPSSHSPAAA FECIDIQNRK GFAAQLLPDF VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	9e-16	351	409	5	63	Homeobox protein Meis2
3k2a_B	9e-16	351	409	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855424.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-113	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0K9QEZ8	0.0	A0A0K9QEZ8_SPIOL; Uncharacterized protein
STRING	XP_010676226.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-104	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]