PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_183450_pazf.t1
Common NameSOVF_183450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 272aa    MW: 31317.9 Da    PI: 5.6097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_183450_pazf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-163481148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll+++v+ +G g+W+  a+  g++R +k+c++rw++yl
  Sp_183450_pazf.t1 34 RGPWTLEEDNLLIHYVACHGEGRWNFLAKSAGLKRNGKSCRLRWLNYL 81
                       89********************************************97 PP
2Myb_DNA-binding50.83.8e-1687130146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Sp_183450_pazf.t1  87 RGNLSPQEQLLILELHSKWGNR-WSKIAAHLP-GRTDNEIKNYWRT 130
                        7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2332981IPR017930Myb domain
SuperFamilySSF466891.56E-3032128IPR009057Homeodomain-like
SMARTSM007173.1E-133383IPR001005SANT/Myb domain
PfamPF002492.8E-153481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-223588IPR009057Homeodomain-like
CDDcd001675.31E-103681No hitNo description
PROSITE profilePS5129425.16482136IPR017930Myb domain
SMARTSM007176.5E-1586134IPR001005SANT/Myb domain
PfamPF002493.0E-1587130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2389135IPR009057Homeodomain-like
CDDcd001676.52E-1191130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKTENPADDN LINISNNNNR IQQEDQEAAE EVRRGPWTLE EDNLLIHYVA CHGEGRWNFL  60
AKSAGLKRNG KSCRLRWLNY LKPDIKRGNL SPQEQLLILE LHSKWGNRWS KIAAHLPGRT  120
DNEIKNYWRT RVQKQARQLN MEANSQSFID AIRCFYMPRL VQKIEQNSID HHTTAMNTDQ  180
VSHIIPSSNK DTSCSNTSLE FQDQLTNSKD GSSIVLDDIN SVNSCNYDMD LGSMSASDML  240
FSGCHVEGND WLANDMAEDG MWVLDELWQF RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-243113624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854845.10.0transcription factor MYB62-like
SwissprotQ9C9G71e-85MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0K9QG060.0A0A0K9QG06_SPIOL; Uncharacterized protein
STRINGXP_010681493.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.16e-88myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]