PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_182750_hxik.t1
Common NameSOVF_182750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YB
Protein Properties Length: 159aa    MW: 17891.7 Da    PI: 5.2782
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_182750_hxik.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB131.52.8e-411811797
              NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                       mk++lP  akisk  ket+qecv+efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y e++++yl+kyre+e+ek
  Sp_182750_hxik.t1  1 MKQILPPSAKISKGGKETMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALTTLGFDNYGEAITQYLHKYREFEREK 81
                       9*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.56E-29186IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.4E-401136IPR009072Histone-fold
PfamPF008081.7E-17155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-181937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-183856No hitNo description
PRINTSPR006153.1E-185775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKQILPPSAK ISKGGKETMQ ECVTEFISFV TGEASDKCHK ENRKTVNGDD ICWALTTLGF  60
DNYGEAITQY LHKYREFERE KACQGKADDG GRVVGGAAAG GSSSSNEETY HHHHHEEEEA  120
TTIMFGNQQQ QQQQQQQQQP RLDVESSVFP LEFRIIDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-321761792Transcription factor HapC (Eurofung)
4g92_B5e-321761792Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847156.11e-117nuclear transcription factor Y subunit B-4-like
SwissprotO040271e-40NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0K9QHV61e-116A0A0K9QHV6_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010674711.11e-67(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-42nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]